Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs56783248 chr1:16344684 G/A 2.36E-5 493 31.87 25.93 67.52 KM Plot
PRAD rs56871644 chr5:7305176 C/G 2.57E-8 471 30.78 29.97 10.07 KM Plot
PRAD rs56895891 chr5:154295612 T/A 0 483 29.63 32.4 4.87 KM Plot
PRAD rs57080744 chr12:9463296 C/T 7.46E-11 482 31.27 26.13 18.2 KM Plot
PRAD rs57313044 chr13:23996836 C/T 4.7E-7 489 31.18 29.63 23.67 KM Plot
PRAD rs5743864 chr11:1328871 A/G 1.41E-6 483 61.83 32.88 29.8 KM Plot
PRAD rs5743867 chr11:1328351 G/A 1.41E-6 483 61.83 32.88 29.8 KM Plot
PRAD rs5743885 chr11:1326298 G/A 1.37E-6 486 61.83 32.63 29.8 KM Plot
PRAD rs5743901 chr11:1323212 A/G 1.52E-6 485 61.83 32.63 29.63 KM Plot
PRAD rs5743904 chr11:1322798 C/T 1.59E-6 484 61.83 32.43 29.63 KM Plot
PRAD rs5743907 chr11:1322621 A/G 1.59E-6 484 61.83 32.43 29.63 KM Plot
PRAD rs5743909 chr11:1322035 T/G 1.59E-6 484 61.83 32.43 29.63 KM Plot
PRAD rs5749939 chr22:22141825 C/T 2.89E-7 494 31.3 27.37 34.32 KM Plot
PRAD rs57524763 chr1:1158562 AAC/A 0 482 31.27 30.98 7.02 KM Plot
PRAD rs5754932 chr22:22100718 A/G 0.000187 494 30.2 27.37 31.27 KM Plot